Testing the Installed Tools¶
You would have tested some of these during the installation, but just in case, we’ll recap. Note that the exact version numbers need not match perfectly.
- Open a terminal window (Git Bash on Windows)
- Confirm Conda is installed by running:
$ conda --version
conda 4.4.10
- Confirm Git is installed by running:
$ git --version
git version 2.16.2.windows.1
- Confirm Python 3 from Anaconda is installed by running:
$ python --version
Python 3.6.4 :: Anaconda, Inc.
- Confirm the Python libraries we will be using are installed by running:
$ python -c "import Bio; import bioservices; import seaborn; import reportlab"
- Confirm Muscle is installed by running:
$ muscle -version
MUSCLE v3.8.31 by Robert C. Edgar
- Confirm NCBI BLAST+ is installed by running:
$ blastn -v
USAGE
blastn [-h] [-help] ...
- You should have already tested that the Java applications can start.